species:   Clros
pid:       PID2267
parent:    cro-mir-59
paralog:   
locus:     CADEHS020000521.2:317998-318082
matures:   ['UCUGAACAGCGCCUGAGAGC', 'GAAUCUCUGGGGCAGCGUCAGAA']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000521.2:317998-318082

3 out of bounds
4 alignments
2 proper strand
2 stranded perfect matches

*******************                                              ******************* 
UCUGAACAGCGCCUGAGAGCGAGCAAGCAAGCGAGCGAACGAGCGUGAGGGCUGGCAGCGAGAAUCUCUGGGGCAGCGUCAGAAG
(((((.(.((((((.((((((.((.(((...((.((......)).))...))).))..)).....)))).)))).))))))))..
UCUGAACAGCGCCUGAGAGC----------------------------------------------------------------- l=20 a=0 c
-------------------------------------------------------------GAAUCUCUGGGGCAGCGUCAGAA- l=23 a=0 c*
UCUGAACAGCGCCUGAGAG------------------------------------------------------------------ l=19 a=1 ma
-------------------------------------------------------------------CUGGGGCAGCGUCAGAA- l=17 a=0 ma*

UCUGAACAGCGCCUGAGAG------------------------------------------------------------------ l=19 a=1 (ma)
----------------------------------------------------UGGCAGCGAGAAUCUCUGG-------------- l=19 a=1 

mb-01111
ax-1011001
ku-01
ss-100010111100
fn-001
